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Classification of germline SNVs and indels

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Classification of germline SNVs. Submit results via a proforma.(this EQA was previously named 'pathogenicity of germline sequence variants)

EQA INFORMATION

EQA Code
VGC
Submission
Proforma
Techniques
N/A
Eligibility
All laboratories worldwide
Language
English only
EQA Accreditation
EQA accredited to ISO 17043:2023
EQA open

06 October 2025

Testing period
6 weeks

OTHER INFORMATION

This EQA is suitable for laboratories who provide the pathogenicity of sequence variants to clinical staff for interpretation. Please complete the cases even if your laboratory does not routinely test for the disorder listed. Cases are the same as those used for the GenQA Classification & Interpretation EQA

What are participants required to do?
  • Enrolled participants will receive details by email when an EQA is open for assessment and/or samples have been dispatched.  
  • Participants are expected to access the instructions and information for the cases/samples online and to analyse them according to their laboratory/centre protocols. 
  • Participants must submit their anonymised results by the deadline using their standard laboratory report or a proforma provided by GenQA.  The submitted results are independently assessed for the accuracy of the analytical/genotyping results, clinical interpretation of the results (if appropriate) and clerical accuracy (including report layout and content). 

What can I expect as a participant?
Every participant will receive:
  • An Individual Laboratory/Centre Report (ILR/ICR) with educational advice for each distribution of this EQA.
  • The Summary report for each distribution of this EQA which contains information regarding general findings, a summary of methodologies used, common errors, number of participants and benchmarking. 
  • Access to a live Performance Certificate summarising your performance status for all EQAs in which you are enrolled.

Please note: EQA details may be subject to change prior to EQA distribution.  

PRODUCTS

Sample type: Case scenario
Testing/analysis: Determine the classification of several SNVs and small indels (<50bp). Submit your classification and supporting evidence in a proforma.
Conditions/Gene target(s): Any disorder/gene.
Number of cases: Two / Three

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Classification of germline SNVs and indels

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